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Posted on January 3, 2023 (Updated on July 19, 2025)

Zonal Statistics not running in QGIS 3.12

Hiking & Activities

Zonal Statistics Giving You a Headache in QGIS 3.12? Let’s Fix It!

So, you’re trying to wrangle some zonal statistics in QGIS 3.12, and things aren’t exactly going smoothly? You’re not alone! Zonal stats is a seriously powerful tool – lets you crunch numbers on raster data within specific zones you define with a polygon layer. But sometimes, it just doesn’t want to play nice. Let’s dive into some common headaches and, more importantly, how to fix them.

When the Algorithm Finishes But Nothing Happens…

Ever had that super frustrating experience where the zonal statistics tool seems to run perfectly, but then…nothing? No new columns in your attribute table, nada. The little window just flickers and vanishes, leaving you scratching your head. I’ve been there, trust me.

  • The Fix: This is often a QGIS quirk with how it handles temporary outputs. Basically, zonal stats should create a temporary layer with the results. Try toggling editing mode on and off for your polygon layer – sounds weird, but it can kick things into gear. Also double-check that you’re actually looking at the attribute table of the correct layer after running the tool. It’s easy to get mixed up! Make sure the output is correctly saved, too.

The Dreaded NULL Values

Another classic problem: you run the analysis, and all you get are NULL values staring back at you. Ugh. What gives?

  • The Fix: Several culprits could be at play here:

    • CRS Chaos: This is a big one. Are your raster and vector layers using the same Coordinate Reference System (CRS)? They absolutely have to be! And ideally, you want a projected CRS, not a geographic one. I learned this the hard way after spending hours troubleshooting a seemingly simple analysis. If the CRS is off, QGIS might run the algorithm, but the results will be empty. You might need to resave your polygon shapefile and explicitly set the projection there.
    • Raster MI Does your raster layer fully cover your input layer? Think of it like this: if your raster is like a puzzle piece that doesn’t quite fit over your polygon layer, you’ll get NULLs where the polygons extend beyond the raster’s edge.
    • Cell Size Blues: Imagine your raster cells are huge, and your polygons are tiny. If a polygon is smaller than a raster cell, the tool might not find any cell centroids within the boundary, giving you NULLs or just plain wrong stats. Try resampling your raster to a finer resolution. It might take some trial and error to find the sweet spot.
    • NoData Nightmares: QGIS sometimes struggles with NoData values in rasters. It might treat them as some crazy number like -3.4e+38, which skews all your statistics. Keep an eye out for this!
    • Geometry Gremlins: Sometimes, the polygons themselves have errors. Run the “Fix geometries” tool (you’ll find it in the Processing Toolbox) to clean them up.

When “Count” Goes Crazy

Ever seen the “count” value in your zonal statistics output as a decimal instead of a whole number? This usually happens when your polygons are smaller than the raster pixels.

  • The Fix: Again, resampling the raster to a higher resolution is your best bet here.

QGIS Just Freezes Up?!

Okay, this is a more serious issue. If the Zonal Statistics tool is causing QGIS to freeze, you might be running into a bug.

  • The Fix: Not much you can do here besides try again, restart QGIS, or consider upgrading to a newer version (or downgrading to an older, more stable one).

Plugin vs. Toolbox: A Subtle But Important Distinction

If you’re using the Zonal Statistics plugin, try running the tool directly from the Processing Toolbox instead. Sometimes, one works when the other doesn’t. Go figure!

Pro Tips for Zonal Stats Success

  • CRS is King: Seriously, double, triple-check your Coordinate Reference Systems!
  • Coverage is Key: Make sure your raster data completely covers the area you’re analyzing.
  • Cell Size Matters: Adjust your raster cell size to match the scale of your polygons.
  • NoData Awareness: Be aware of how NoData values are handled.
  • Geometry Checkup: Always fix any geometry errors in your vector layer.
  • Stay Updated (or Not!): While I’m focusing on QGIS 3.12, consider upgrading to the latest stable version…unless that’s causing the problems! Sometimes older versions are more reliable.

By keeping these points in mind, you should be able to tame the Zonal Statistics beast in QGIS 3.12 and unlock some awesome insights from your spatial data. Good luck, and happy mapping!

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