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Posted on December 27, 2022 (Updated on July 21, 2025)

How to return raster values based on polygon (shapefile) boundaries in QGIS?

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Getting Raster Values Inside Polygons with QGIS: A Human’s Guide

So, you’ve got some cool geospatial data – maybe a satellite image showing land use, or a digital elevation model painting a picture of the terrain. And you’ve got a shapefile, outlining specific areas you’re interested in, like parks, property lines, or even just some random zones you’ve defined. Now, how do you pull the raster data just from inside those shapes? That’s where QGIS comes in, and trust me, it’s easier than it sounds.

Think of raster data as a giant grid, like a digital quilt, where each square (or pixel) holds a value. That value could be anything: temperature, elevation, you name it. Shapefiles, on the other hand, are like cookie cutters, defining the exact areas you want to “cut out” from that raster quilt.

QGIS gives you a few different ways to make that cut, and each has its strengths. Let’s dive into the most useful ones.

Method 1: Zonal Statistics – The All-in-One Tool

This is your Swiss Army knife for raster extraction. Zonal Statistics doesn’t just grab the values; it summarizes them for each polygon. We’re talking averages, minimums, maximums, the whole shebang! It’s like getting a quick report card for each area.

Here’s the play-by-play:

  • Load ’em up: Get both your raster layer and polygon shapefile into QGIS. Think of it as setting up your ingredients for a recipe.
  • Find the magic: Go to “Raster” -> “Zonal Statistics” -> “Zonal Statistics.” Or, if you’re a Processing Toolbox fan (like me!), just search for “Zonal Statistics.”
  • Tweak the knobs:
    • Tell it which raster you want to sample.
    • Point it to the shapefile that defines your zones.
    • Pick the stats you want – mean is usually a good starting point, but don’t be afraid to experiment!
    • Give your new columns a prefix, so you know where they came from.
  • Hit “Run” and watch the magic happen.
  • Check the results: Open the attribute table of your shapefile. Boom! New columns filled with statistical goodness.
  • Why I love it: It’s quick, it’s easy, and it gives you a ton of info right off the bat. Perfect for getting a general overview.

    Method 2: Zonal Histogram – Seeing the Distribution

    Sometimes, just knowing the average isn’t enough. What if you want to see how the values are distributed within each polygon? That’s where the Zonal Histogram comes in. It creates a histogram – a visual representation of the frequency of each value – for each zone.

    The steps are similar:

  • Load your data, as always.
  • Find Zonal Histogram in the Processing Toolbox.
  • Configure the parameters: raster layer, polygon shapefile, and a place to save the output table.
  • Run it!
  • Open the output table: You’ll see the frequency of each raster value within each polygon.
  • Why use this? Imagine you’re analyzing land cover. Zonal Statistics might tell you that, on average, each park is 50% forest. But the histogram will show you if it’s mostly old-growth forest, or a mix of young trees and shrubs. Big difference!

    Method 3: Sample Raster Values – Getting Specific

    Need to know the exact raster value at a specific point within a polygon? “Sample Raster Values” is your tool. Now, it’s designed for point data, but we can easily adapt it for polygons. The trick? Turn those polygons into points first!

    Here’s how:

  • Load your raster and polygon layers.
  • Convert polygons to points: Use the “Centroids” tool to create a point at the center of each polygon.
  • Find “Sample Raster Values” in the Processing Toolbox.
  • Set it up:
    • Input point layer: the points you just created.
    • Raster layer(s): your raster data.
    • Output layer: where to save the results.
  • Run it!
  • Check the output: The attribute table of the new point layer will have a column with the raster value at each point.
  • When to use this: If you’re studying something very localized, like the elevation at the exact center of each building in a city, this is the way to go.

    Method 4: Raster Calculator + Masking – A Visual Approach

    This method is a bit more involved, but it gives you a nice visual result. We’re going to use the Raster Calculator to “mask” the raster, so only the values inside the polygons are visible.

    Here’s the breakdown:

  • Load your data. You know the drill.
  • Rasterize the polygons: Convert your shapefile into a raster layer. This is like creating a stencil of your polygons. Make sure it lines up perfectly with your original raster! Give the pixels inside the polygons a value of 1.
  • Open the Raster Calculator. (“Raster” -> “Raster Calculator”)
  • Enter the magic formula: Something like (“raster@1” * “rasterized_polygon@1”). Replace “raster” and “rasterized_polygon” with the actual names of your layers. This multiplies the raster values by 1 (inside the polygons) and by 0 (outside), effectively cutting out the parts you don’t want.
  • Name your output and hit “OK.”
  • Admire your handiwork: The resulting raster will only show the values within your polygons. Everything else will be “NoData” – transparent.
  • Why this is cool: It’s a great way to visually isolate the data you’re interested in. Plus, you can then use other raster analysis tools on this masked raster.

    Important Stuff to Keep in Mind

    • Coordinate Systems: Make sure your raster and vector layers are speaking the same language! If not, reproject them to a common CRS. Trust me, this will save you headaches down the road.
    • Resolution Matters: A high-resolution raster will give you more detailed results, but it’ll also take longer to process. Find the right balance for your needs.
    • NoData is Real: Handle those “NoData” values carefully. Sometimes, you’ll want to fill them in; other times, you’ll want to ignore them.
    • Batch Processing is Your Friend: Got a ton of files to process? Don’t do it manually! Use QGIS’s batch processing to automate the whole thing.

    Final Thoughts

    Extracting raster values within polygon boundaries is a core skill for any geospatial analyst. QGIS gives you the tools you need to do it efficiently and effectively. So, experiment with these methods, find what works best for you, and go make some amazing maps!

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